atlas 5 software (Carl Zeiss)
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Carl Zeiss
atlas 5 software
Atlas 5 Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atlas+5/5+atlas+software/pmc12263489-159-6-6
Average 90 stars, based on 1 article reviews
Atlas 5 Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atlas+5/5+atlas+software/pmc12263489-159-6-6
Average 90 stars, based on 1 article reviews
atlas 5 software - by Bioz Stars,
2026-10
90/100 stars
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Software:Article Title: Ribosome-Targeting Antibiotics Impair T Cell Effector Function and Ameliorate Autoimmunity by Blocking Mitochondrial Protein Synthesis. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MOG35–55 peptide Dr Werner Tegge, HZI Braunschweig N/A Corn oil Sigma C8267 (Z)-4-Hydroxytamoxifen Caymen 14854 Pertussis Toxin Sigma-Aldrich #180 1X Antibiotic Antimycotic Solution Gibco 15240062 Critical Commercial Assays EasyStepTM Mouse CD4+ Isolation Kit StemCell technologies 19852 EasySep Human Naive CD4+ T Cell Isolation Kit StemCell technologies 19555 Cell Trace Violet Cell Proliferation Kit Invitrogen C34557 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Thermo Fisher L34957 Seahorse XFe96 FluxPak Agilent 102416-100 Qiagen RNAeasy Kit Qiagen #74106 Oligomycin Sigma-Aldrich 75351 FCCP Cayman 15218 Antimycin A Abcam ab141904 Rotenone Cayman 139995 Lactate Assay kit Sigma-Aldrich MAK064 NAD/NADH-GloTM Assay Promega G9072 ADP/ATP Ratio Assay kit Abcam ab83359 Deposited Data Raw and processed RNA-seq data Gene Expression Omnibus GSE159401 Experimental Models: Cell Lines .. Experimental Models: Organisms/Strains Gfm1tm1a(EUCOMM)Wtsi: C57BL/6NTacGfm1tm1a(EUCOMM)Wtsi/WtsiBiat EMMA EM:05706 Flp-expressing mice: B6;SJL-Tg(ACTFLPe) 9205Dym/J Jackson Stock No: 003800 Cd4CreERT2/WT: Cd4tm1(cre/ERT2)Thbu (Sledzi nska et al., 2013) N/A Software and Algorithms FlowJo software (Tree Star, Inc.) FlowJo LLC https://www.flowjo.com/ Ingenuity Pathway Analysis (IPA, QIAGEN) Qiagen N/A GraphPad Prism V6 or V7 GraphPad Software https://www.graphpad.com/ QIAGEN’s Article Title: CLEM Site , a software for automated phenotypic screens using light microscopy and FIB-SEM Article Snippet: .. The server software relied on a dynamic library in .NET provided by Fibics Incorporated to control the microscope via Article Title: CLEM Site , a software for automated phenotypic screens using light microscopy and FIB-SEM Article Snippet: .. To control the FIB-SEM microscope, CLEM Site -EM interfaces commercial software ( SmartSEM and Indirect Immunoperoxidase Assay:Article Title: Ribosome-Targeting Antibiotics Impair T Cell Effector Function and Ameliorate Autoimmunity by Blocking Mitochondrial Protein Synthesis. Article Snippet: REAGENT or RESOURCE SOURCE IDENTIFIER MOG35–55 peptide Dr Werner Tegge, HZI Braunschweig N/A Corn oil Sigma C8267 (Z)-4-Hydroxytamoxifen Caymen 14854 Pertussis Toxin Sigma-Aldrich #180 1X Antibiotic Antimycotic Solution Gibco 15240062 Critical Commercial Assays EasyStepTM Mouse CD4+ Isolation Kit StemCell technologies 19852 EasySep Human Naive CD4+ T Cell Isolation Kit StemCell technologies 19555 Cell Trace Violet Cell Proliferation Kit Invitrogen C34557 LIVE/DEAD Fixable Aqua Dead Cell Stain Kit, for 405 nm excitation Thermo Fisher L34957 Seahorse XFe96 FluxPak Agilent 102416-100 Qiagen RNAeasy Kit Qiagen #74106 Oligomycin Sigma-Aldrich 75351 FCCP Cayman 15218 Antimycin A Abcam ab141904 Rotenone Cayman 139995 Lactate Assay kit Sigma-Aldrich MAK064 NAD/NADH-GloTM Assay Promega G9072 ADP/ATP Ratio Assay kit Abcam ab83359 Deposited Data Raw and processed RNA-seq data Gene Expression Omnibus GSE159401 Experimental Models: Cell Lines .. Experimental Models: Organisms/Strains Gfm1tm1a(EUCOMM)Wtsi: C57BL/6NTacGfm1tm1a(EUCOMM)Wtsi/WtsiBiat EMMA EM:05706 Flp-expressing mice: B6;SJL-Tg(ACTFLPe) 9205Dym/J Jackson Stock No: 003800 Cd4CreERT2/WT: Cd4tm1(cre/ERT2)Thbu (Sledzi nska et al., 2013) N/A Software and Algorithms FlowJo software (Tree Star, Inc.) FlowJo LLC https://www.flowjo.com/ Ingenuity Pathway Analysis (IPA, QIAGEN) Qiagen N/A GraphPad Prism V6 or V7 GraphPad Software https://www.graphpad.com/ QIAGEN’s Imaging:Article Title: A versatile enhanced freeze-substitution protocol for volume electron microscopy Article Snippet: .. Figure Sample Type Freeze-subsitution Protocol Imaging Platform vEM Platform/Mode FCC N2 Settings (%) X-Y resolution Z-Resolution (slice thickness) Image Pixel Resolution Voltage (kV) Beam Current Dwell/Image-Time 2A Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 130nm NA 3000x4000 5 1pA 3μs 2B Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 5nm 50nm 10000x10000 5 1pA 3μs 2C Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 5nm 50nm 10000x10000 5 1pA 3μs 2D Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 5nm 50nm 10000x10000 5 1pA 3μs 3A Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 25 130nm NA 4000x4000 5 1pA 4μs 3B Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs 3C Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs 3D Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs 3E Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs Suppl_Video 1 Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs Transmission Electron Microscopy:Article Title: A versatile enhanced freeze-substitution protocol for volume electron microscopy Article Snippet: .. Figure Sample Type Freeze-subsitution Protocol Imaging Platform vEM Platform/Mode FCC N2 Settings (%) X-Y resolution Z-Resolution (slice thickness) Image Pixel Resolution Voltage (kV) Beam Current Dwell/Image-Time 2A Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 130nm NA 3000x4000 5 1pA 3μs 2B Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 5nm 50nm 10000x10000 5 1pA 3μs 2C Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 5nm 50nm 10000x10000 5 1pA 3μs 2D Barley Root Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 10 5nm 50nm 10000x10000 5 1pA 3μs 3A Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 25 130nm NA 4000x4000 5 1pA 4μs 3B Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs 3C Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs 3D Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs 3E Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs Suppl_Video 1 Barley Anther Manual FSaqOTO ZEISS GeminisSEM300 Gatan 3-View 2XP w FCC 35 5nm 50nm 10000x10000 5 1pA 3μs Article Title: Homocysteine contributes to atherogenic transformation of the aorta in rabbits in the absence of hypercholesterolemia. Article Snippet: .. Scanning transmission electron microscopy (STEM) was done by stitching TEM images with Tomography:Article Title: Automated segmentation of cell organelles in volume electron microscopy using deep learning. Article Snippet: .. FIBSEM data were collected using a Crossbeam 540 FIBSEM with Article Title: Pathological structural conversion of α-synuclein at the mitochondria induces neuronal toxicity Article Snippet: After mounting, each sample was sputter coated with a 10-nm layer of platinum (Q150S, Quorum Technologies). .. Focused ion beam scanning electron microscopy (FIB SEM) was carried out using a Crossbeam 540 FIB SEM with Transmission Assay:Article Title: Homocysteine contributes to atherogenic transformation of the aorta in rabbits in the absence of hypercholesterolemia. Article Snippet: .. Scanning transmission electron microscopy (STEM) was done by stitching TEM images with Electron Microscopy:Article Title: Homocysteine contributes to atherogenic transformation of the aorta in rabbits in the absence of hypercholesterolemia. Article Snippet: .. Scanning transmission electron microscopy (STEM) was done by stitching TEM images with Article Title: Pathological structural conversion of α-synuclein at the mitochondria induces neuronal toxicity Article Snippet: After mounting, each sample was sputter coated with a 10-nm layer of platinum (Q150S, Quorum Technologies). .. Focused ion beam scanning electron microscopy (FIB SEM) was carried out using a Crossbeam 540 FIB SEM with Control:Article Title: CLEM Site , a software for automated phenotypic screens using light microscopy and FIB-SEM Article Snippet: .. The server software relied on a dynamic library in .NET provided by Fibics Incorporated to control the microscope via Article Title: CLEM Site , a software for automated phenotypic screens using light microscopy and FIB-SEM Article Snippet: .. To control the FIB-SEM microscope, CLEM Site -EM interfaces commercial software ( SmartSEM and Microscopy:Article Title: CLEM Site , a software for automated phenotypic screens using light microscopy and FIB-SEM Article Snippet: .. The server software relied on a dynamic library in .NET provided by Fibics Incorporated to control the microscope via Article Title: CLEM Site , a software for automated phenotypic screens using light microscopy and FIB-SEM Article Snippet: .. To control the FIB-SEM microscope, CLEM Site -EM interfaces commercial software ( SmartSEM and |